New Model Predicts Forest Dynamics Using Genomic Data

James P. O’Dwyer and his collaborators created this first-of-its-kind model at the Wind River Forest Dynamics plot in southern Washington state. This new, cutting-edge approach represents a more complex but realistic way to predict future composition changes in forest communities. In addition to genomic data, the model uses effective population size—the population size concept in…

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New Model Predicts Forest Dynamics Using Genomic Data

James P. O’Dwyer and his collaborators created this first-of-its-kind model at the Wind River Forest Dynamics plot in southern Washington state. This new, cutting-edge approach represents a more complex but realistic way to predict future composition changes in forest communities. In addition to genomic data, the model uses effective population size—the population size concept in evolutionary biology. This technique is highly informative in understanding species co-occurrence patterns and population dynamics. This groundbreaking method, which merges information from a local, one-time tree census with genomic data, … It’s a great example of the promise of cutting edge approaches in ecological forecasting.

Effective population size is the number of individuals that contribute offspring to the next generation. These people successfully reproduce, passing on their genetic material to the next generation. Originally detailed close to a hundred years ago, this idea is foundational for understanding the different ways that species interact with one another in ecosystems. O’Dwyer is an artist and writer whose work has long been concerned with ecological transformation. He proceeded to point out that amongst species with similar effective population sizes, coexistence is more likely. This discovery serves as the foundation to the model’s predictive power when estimating the fate of different species to co-inhabit shared spaces.

The research team, including graduate student Kenneth Jops, specifically focused on the Wind River plot, part of the Smithsonian Forest Global Earth Observatory. To answer these questions, they assembled genomic data for about 100 individuals from eight species of trees. By integrating this with census data of trees greater than one centimeter in diameter, they developed a robust model that exceeded the standard technique. What they found The model’s predictions matched population changes for those eight species in both 2016 and 2021.

The Significance of Effective Population Size

Effective population size provides an important measure of whether or not a population will be able to persist in its current habitat. O’Dwyer emphasized that reckoning with this idea was critical to anticipating ecological consequences. The closer two species’ effective population sizes are to each other, the greater chance they have to co-exist without one species necessarily outcompeting the other. This important principle informs researchers to calculate the long-term stability of forest communities and predict changes in forest biodiversity in the future.

On the ground, O’Dwyer and his collaborators tested their predictions on a tropical forest in Panama. They found that the effective population size was a good predictor of short-term expected population declines. This understanding points to genomic variation as a powerful tool that brings precision to the practice of ecological forecasting. By utilizing this underexplored resource, researchers are able to gain unparalleled insights into how species interact and adapt to their environments.

The model’s success at the Wind River plot proves its potential applicability to other ecosystems. By utilizing effective population size and genomic data, scientists can gain valuable insights into forest dynamics and predict future changes in species abundance.

Streamlined Approaches to Data Collection

Historically, the challenge of gathering detailed life history information from thousands of species over decades of time has been an imposing hurdle for ecological science. To address this challenge, O’Dwyer and his team wanted to find a way to make their data collection process more efficient. They decided against collecting almost 30 years’ worth of data. Instead, they focused on genomic data for a wide swath of individuals that covered the landscape of tree species.

Led by Jones, the team collected genomic samples from 100 individuals across each of the eight tree species included in their study. This timely and efficient approach empowered them to produce actionable insights, which could otherwise only be gleaned through large-scale longitudinal studies, in real time. By zeroing in on genomic data, they were more accurately and efficiently able to predict a forest’s future dynamics.

This move to big genomic data makes ecological modeling quicker and increases the accuracy of the models. This population genomic variation, O’Dwyer explained, is a valuable yet underutilized resource. He reiterated how crucial the Federal government is in leading the charge to dig deeper into this space. Indeed, as researchers increase their capacity to leverage creative new approaches to data collection, the possibility for more refined ecological predictions will only grow.

Implications for Future Research

Our population model is able to explain how effective population size predicts species coexistence and abundance variation. Consequently, it provides exciting new opportunities to conduct and engage with ecological research and conservation efforts. Species interactions and adaptations Species behavior, interactions and adaptability to changing environments is a core component of biodiversity, resilience and ecosystem stability.

As climate change and habitat loss further endanger forests on all continents, predictive models like O’Dwyer’s will prove more and more essential to global conservation efforts. By identifying which species are likely to thrive or decline in response to environmental changes, scientists can develop targeted conservation strategies aimed at preserving biodiversity.

Additionally, the use of genomic data in ecological studies is a major scientific advancement in how researchers are studying biodiversity and its assessments. As O’Dwyer recommended, leveraging population genomic variation will allow for more precise predictions and more informed conservation practices.